Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015791745.1_cds_XP_016508730.1_2103
CDS Infomation

[gene=LOC107826279] [db_xref=GeneID:107826279] [protein=probable polygalacturonase] [protein_id=XP_016508730.1] [location=join(41803..41838,41926..42261,44350..44470,44678..44852,44950..45020,45207..45916)] [gbkey=CDS]
Sequence

ATGGAGTTTCCAATTATCACTCTCAGAAACATTCCTGCAATTCACAGGATTTTACTACTA
GCCGTAGTGATTCTAACGGCGTTAGGCAACGTTCACGGCCGTCATAAAGTACACAAATGG
GAAACAATAGAGTACTCCGCCATAAGTTGCAGAGCACACACCGCTTGGTTGACGGATTTT
GGTGGAGTTGGTGACGGAACGACGTTGAACACTAATGCTTTTAAAACTGCCGTTGATCAC
TTGAGTCAGTTTCAATCAGACGGTGGTTCGCTGCTGTATGTACCCGCCGGAAAATGGTTG
ACGGGGAGTTTTAATTTGACTAGCCATTTTACTCTGTATTTCGACAAAGATGCCGTTCTT
CTCGCCTCTGAGGATGAAAATGATTATCCGGTGATTGCACCGCTGCCATCCTACGGTCGA
GGAAGGGATAATGACGGAGGTAGATTCATTAGTCTTATTTTTGGAGCCAACCTCACCGAT
GTTGTCATCACAGGGGAAAATGGAACAATTGATGGTCAAGGGCAGCTATGGTGGGACAAA
TTCCACAAAAAAGAACTACAATATACAAGGCCATATCTGATAGAAATTATGTACTCTGAT
AACATTCAAATCTCGAGTCTTACATTGGTTAATTCTCCTTCATGGAATGTCCATCCTGTA
TATTGCAGCAATATTATTATCCAAGGCATCACTATCCTTGCACCAGTCAGATCTCCAAAT
ACTGATGGGATTAACCCTGATTCTTGCATAAATACTCGAATAGAAGACTGTTACATTGTC
TCTGGAGATGATTGTATTGCTGTTAAGAGTGGCTGGGACGAGTATGGAGTTGCATTTGGG
ATGCCAACAAAGCAGCTCGCTATAAGGCGAATCACCTGCATTTCTCCAACCAGTGCTACA
ATTGCATTAGGCAGTGAAATGTCTGGAGGAATTCAGGATGTAAGAGCAGAGGACATAGTA
GCAATCGATACAGAATCAGGGGTTCGAATCAAGACTGCAGTAGGACGAGGTGGATACGTA
AAGGATATATATGTTAAAGGTGTGACAATGAAAACCATGAAATATGTATTCTGGATGACA
GGAGATTATGGTTCTCACCCTGATAACAATTATGATCCGAATGCATTGCCTGTGATCGAC
AACATCAATTACCGCGATATGGTTGCTGAGAATGTGACCATTGCTGCTAAGCTTTCAGGA
ATTTCTGGTGATCCATTCACTGGAATTTGCATATCAAATGTCACGATTGAGTTGGCGCCT
AAAGCAAAGAAACTGGCTTGGAATTGTACAGATATTTCGGGGATTTCAAGTGGTGTGGTT
CCTCAGCCTTGTGAGTTGTTGCCAGATCAGGGAACAGAGAACGTTGCGCCCTGTAATTTC
CCAACAGAGAACTTACCAATTGATGAAATGAAAGTTCAGACGTGTTACTGCAGGAAGAAA
ATATATTAA

Peptide Sequence

PEP ID

XP_016508730.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MEFPIITLRNIPAIHRILLLAVVILTALGNVHGRHKVHKWETIEYSAISCRAHTAWLTDF
GGVGDGTTLNTNAFKTAVDHLSQFQSDGGSLLYVPAGKWLTGSFNLTSHFTLYFDKDAVL
LASEDENDYPVIAPLPSYGRGRDNDGGRFISLIFGANLTDVVITGENGTIDGQGQLWWDK
FHKKELQYTRPYLIEIMYSDNIQISSLTLVNSPSWNVHPVYCSNIIIQGITILAPVRSPN
TDGINPDSCINTRIEDCYIVSGDDCIAVKSGWDEYGVAFGMPTKQLAIRRITCISPTSAT
IALGSEMSGGIQDVRAEDIVAIDTESGVRIKTAVGRGGYVKDIYVKGVTMKTMKYVFWMT
GDYGSHPDNNYDPNALPVIDNINYRDMVAENVTIAAKLSGISGDPFTGICISNVTIELAP
KAKKLAWNCTDISGISSGVVPQPCELLPDQGTENVAPCNFPTENLPIDEMKVQTCYCRKK
IY

Transcript Sequence

Gene sequence data has not been registered.